If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ), 'gf_id' => 'HOM05D000835', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000835' ), 'data_identifier' => 'HOM05D000835', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000835', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '712', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p21380' => 'bna', 'A02p39260' => 'bna', 'A03p43110' => 'bna', 'A04p27410' => 'bna', 'A05p25720' => 'bna', 'A06p43370' => 'bna', 'A08p24550' => 'bna', 'A08p24560' => 'bna', 'A08p36080' => 'bna', 'Aa31LG8G9480' => 'aar', 'Aa31LG9G5170' => 'aar', 'Aa31sc167G80' => 'aar', 'Aa31sc291G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3134' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3141' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.224' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.987' => 'aag', 'Actinidia03880' => 'ach', 'Actinidia03881' => 'ach', 'Actinidia03988' => 'ach', 'Actinidia03989' => 'ach', 'Actinidia07357' => 'ach', 'Actinidia07358' => 'ach', 'Actinidia07359' => 'ach', 'Actinidia12785' => 'ach', 'Actinidia12786' => 'ach', 'Actinidia12788' => 'ach', 'Actinidia12789' => 'ach', 'Actinidia12903' => 'ach', 'Actinidia31054' => 'ach', 'Actinidia31055' => 'ach', 'Actinidia31056' => 'ach', 'Actinidia35430' => 'ach', 'Actinidia35431' => 'ach', 'Actinidia36715' => 'ach', 'Actinidia36716' => 'ach', 'Actinidia36717' => 'ach', 'Actinidia37114' => 'ach', 'Actinidia37115' => 'ach', 'Ah.01g003570' => 'amhyb', 'Ah.05g177280' => 'amhyb', 'Ah.05g177880' => 'amhyb', 'Ah.08g222340' => 'amhyb', 'AL1G16200' => 'aly', 'AL1G64320' => 'aly', 'AL3G24590' => 'aly', 'AL3G37390' => 'aly', 'AL9U10900' => 'aly', 'Aqoxy2G02907' => 'aox', 'Aqoxy2G03921' => 'aox', 'Aqoxy7G00932' => 'aox', 'Aqoxy7G02206' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0BXH0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FQW2E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3IE9NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LFK0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D9MEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E5NU3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A15TPK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AH9G4E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DY968D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FP9NT8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L69C3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XP10PA' => 'arhy', 'AT1G06220' => 'ath', 'AT1G56070' => 'ath', 'AT3G12915' => 'ath', 'AT3G22980' => 'ath', 'AT5G25230' => 'ath', 'ATR0620G065' => 'atr', 'ATR0697G100' => 'atr', 'ATR0697G116' => 'atr', 'ATR0697G189' => 'atr', 'ATR0763G253' => 'atr', 'Atru.chr1.165' => 'acertr', 'Atru.chr1.3223' => 'acertr', 'Atru.chr1.3408' => 'acertr', 'Atru.chr6.1375' => 'acertr', 'AUR62001583' => 'cqu', 'AUR62014521' => 'cqu', 'AUR62017960' => 'cqu', 'AUR62020200' => 'cqu', 'AUR62026903' => 'cqu', 'AUR62026906' => 'cqu', 'AUR62038013' => 'cqu', 'AUR62040890' => 'cqu', 'AUR62042417' => 'cqu', 'BcaB02g08932' => 'bca', 'BcaB02g08933' => 'bca', 'BcaB03g13429' => 'bca', 'BcaB03g13430' => 'bca', 'BcaB03g14637' => 'bca', 'BcaB05g21580' => 'bca', 'BcaB06g26420' => 'bca', 'BcaB06g29633' => 'bca', 'BcaB07g33173' => 'bca', 'BcaB07g33259' => 'bca', 'BcaB07g33609' => 'bca', 'BcaB07g33611' => 'bca', 'BcaC01g00180' => 'bca', 'BcaC01g03401' => 'bca', 'BcaC02g07651' => 'bca', 'BcaC03g17853' => 'bca', 'BcaC03g17856' => 'bca', 'BcaC05g27990' => 'bca', 'BcaC07g39512' => 'bca', 'BcaC07g42078' => 'bca', 'BcaC07g42488' => 'bca', 'BcaC08g43676' => 'bca', 'BolC2t11947H' => 'bol', 'BolC3t17558H' => 'bol', 'BolC3t19916H' => 'bol', 'BolC3t19917H' => 'bol', 'BolC4t27973H' => 'bol', 'BolC5t32747H' => 'bol', 'BolC6t36177H' => 'bol', 'BolC8t47034H' => 'bol', 'BolC8t50178H' => 'bol', 'BolC8t52659H' => 'bol', 'BraA01t02043Z' => 'bra', 'BraA02t08891Z' => 'bra', 'BraA03t13453Z' => 'bra', 'BraA05t21453Z' => 'bra', 'BraA06t27223Z' => 'bra', 'BraA07t31934Z' => 'bra', 'BraA08t35515Z' => 'bra', 'C02p58880' => 'bna', 'C02p58900' => 'bna', 'C03p52940' => 'bna', 'C03p76560' => 'bna', 'C03p76610' => 'bna', 'C04p64950' => 'bna', 'C05p40010' => 'bna', 'C06p10950' => 'bna', 'C06p53000' => 'bna', 'C08p02430' => 'bna', 'C08p51330' => 'bna', 'CAN.G1140.7' => 'can', 'CAN.G191.4' => 'can', 'CAN.G20.11' => 'can', 'CAN.G518.24' => 'can', 'CAN.G742.24' => 'can', 'CAN.G994.1' => 'can', 'CAN.G994.2' => 'can', 'CANSAT01G0568' => 'cansat', 'CANSAT54G0347' => 'cansat', 'CANSAT80G2373' => 'cansat', 'CARHR005750' => 'chi', 'CARHR045790' => 'chi', 'CARHR098920' => 'chi', 'Carub.0001s4467' => 'cru', 'Carub.0003s2314' => 'cru', 'Carub.0006s3241' => 'cru', 'Carub.0254s0001' => 'cru', 'Carub.0254s0002' => 'cru', 'Ca_03668_v3' => 'car', 'Ca_12421_v3' => 'car', 'Ca_13611_v3' => 'car', 'Ca_13612_v3' => 'car', 'Ca_19385_v3' => 'car', 'Ca_19388_v3' => 'car', 'Ca_21619_v3' => 'car', 'CBR_g17567' => 'cbr', 'CBR_g2801' => 'cbr', 'CBR_g41482' => 'cbr', 'CBR_g53556' => 'cbr', 'CBR_g57047' => 'cbr', 'CBR_g8750' => 'cbr', 'Cc00_g07340' => 'ccan', 'Cc01_g07990' => 'ccan', 'Cc05_g02310' => 'ccan', 'Cc05_g16160' => 'ccan', 'Cc05_g16170' => 'ccan', 'Cc07_g21000' => 'ccan', 'Cc08_g10850' => 'ccan', 'Cc09_g08770' => 'ccan', 'CDE01G0307' => 'cde', 'CDE01G0562' => 'cde', 'CDE02G0582' => 'cde', 'CDE02G1543' => 'cde', 'CDE02G3324' => 'cde', 'CDE02G3706' => 'cde', 'CDE02G3825' => 'cde', 'CDE02G3883' => 'cde', 'CDE02G4178' => 'cde', 'CDE04G0106' => 'cde', 'CDE04G2791' => 'cde', 'CDE07G0289' => 'cde', 'CDE12G0479' => 'cde', 'Cfa009920' => 'cfa', 'Cfa020900' => 'cfa', 'Cfa022544' => 'cfa', 'Cfa025935' => 'cfa', 'Cfa026707' => 'cfa', 'Ciclev10004309m.g' => 'ccl', 'Ciclev10007342m.g' => 'ccl', 'Ciclev10018844m.g' => 'ccl', 'Ciclev10022950m.g' => 'ccl', 'Ciclev10029986m.g' => 'ccl', 'Ciclev10030601m.g' => 'ccl', 'CiPaw.11G065800' => 'cil', 'CiPaw.11G065900' => 'cil', 'CiPaw.11G066000' => 'cil', 'CiPaw.11G066100' => 'cil', 'CiPaw.11G066200' => 'cil', 'CiPaw.13G147400' => 'cil', 'CiPaw.16G118100' => 'cil', 'ClCG02G017230' => 'cla', 'ClCG02G018300' => 'cla', 'ClCG02G018320' => 'cla', 'ClCG02G018490' => 'cla', 'ClCG09G010670' => 'cla', 'COL.COLO4_00157' => 'col', 'COL.COLO4_00281' => 'col', 'COL.COLO4_05077' => 'col', 'COL.COLO4_07381' => 'col', 'COL.COLO4_08186' => 'col', 'COL.COLO4_09989' => 'col', 'COL.COLO4_09990' => 'col', 'COL.COLO4_13035' => 'col', 'COL.COLO4_13036' => 'col', 'COL.COLO4_14020' => 'col', 'COL.COLO4_14072' => 'col', 'COL.COLO4_14112' => 'col', 'COL.COLO4_19855' => 'col', 'COL.COLO4_22682' => 'col', 'COL.COLO4_22685' => 'col', 'COL.COLO4_27866' => 'col', 'COL.COLO4_31857' => 'col', 'Cpa.g.sc103.45' => 'cpa', 'Cpa.g.sc103.46' => 'cpa', 'Cpa.g.sc67.69' => 'cpa', 'Cpa.g.sc7.82' => 'cpa', 'Cre12.g516200' => 'cre', 'Cre13.g564950' => 'cre', 'Cre17.g737250' => 'cre', 'CsaV3_2G003560' => 'csa', 'CsaV3_6G013750' => 'csa', 'CsaV3_6G015730' => 'csa', 'CsaV3_6G015750' => 'csa', 'CsaV3_7G021670' => 'csa', 'CSS0012454' => 'camsi', 'CSS0016566' => 'camsi', 'CSS0029698' => 'camsi', 'CSS0030129' => 'camsi', 'CSS0040056' => 'camsi', 'CSS0040726' => 'camsi', 'DCAR_001041' => 'dca', 'DCAR_009642' => 'dca', 'DCAR_014922' => 'dca', 'DCAR_016826' => 'dca', 'DCAR_019928' => 'dca', 'Dinv18870' => 'din', 'Dinv32150' => 'din', 'Dinv36911' => 'din', 'Dinv37182' => 'din', 'Duzib084G1241' => 'dzi', 'Duzib147G1214' => 'dzi', 'Duzib168G0565' => 'dzi', 'Duzib168G1623' => 'dzi', 'Duzib187G1701' => 'dzi', 'Duzib268G0503' => 'dzi', 'ECA233G2238' => 'eca', 'ECA234G0529' => 'eca', 'ECA236G3585' => 'eca', 'ECA247G0982' => 'eca', 'ECA248G2952' => 'eca', 'EL10Ac1g00674' => 'bvu', 'EL10Ac2g03330' => 'bvu', 'EL10Ac2g03333' => 'bvu', 'EL10Ac7g16262' => 'bvu', 'Eucgr.B02912' => 'egr', 'Eucgr.C04091' => 'egr', 'Eucgr.F01462' => 'egr', 'FAN01G0835' => 'fan', 'FAN01G1742' => 'fan', 'FAN03G3509' => 'fan', 'FAN06G2977' => 'fan', 'FAN06G3378' => 'fan', 'FAN10G2975' => 'fan', 'FAN11G1638' => 'fan', 'FAN11G2664' => 'fan', 'FAN11G3066' => 'fan', 'FAN12G0217' => 'fan', 'FAN12G0414' => 'fan', 'FAN12G0605' => 'fan', 'FAN12G3938' => 'fan', 'FAN14G4321' => 'fan', 'FAN16G0212' => 'fan', 'FAN16G0727' => 'fan', 'FAN16G2599' => 'fan', 'FAN21G2228' => 'fan', 'FAN21G3146' => 'fan', 'FAN21G3290' => 'fan', 'FAN22G0884' => 'fan', 'FAN22G1188' => 'fan', 'FAN25G0261' => 'fan', 'FAN25G1519' => 'fan', 'FAN25G3716' => 'fan', 'FvH4_2g24581' => 'fve', 'FvH4_3g14510' => 'fve', 'FvH4_3g15630' => 'fve', 'FvH4_3g15640' => 'fve', 'FvH4_4g00530' => 'fve', 'FvH4_4g04790' => 'fve', 'FvH4_4g04800' => 'fve', 'FvH4_4g04801' => 'fve', 'FvH4_5g27362' => 'fve', 'FvH4_6g08980' => 'fve', 'FvH4_7g03790' => 'fve', 'Glyma.08G170000' => 'gma', 'Glyma.09G283700' => 'gma', 'Glyma.10G191800' => 'gma', 'Glyma.13G165400' => 'gma', 'Glyma.15G256900' => 'gma', 'Glyma.15G257100' => 'gma', 'Glyma.17G105700' => 'gma', 'Glyma.19G111600' => 'gma', 'Gohir.A01G039500' => 'ghi', 'Gohir.A04G048000' => 'ghi', 'Gohir.A09G095700' => 'ghi', 'Gohir.A11G291400' => 'ghi', 'Gohir.A12G232600' => 'ghi', 'Gohir.A13G152900' => 'ghi', 'Gohir.A13G222500' => 'ghi', 'Gohir.D01G027300' => 'ghi', 'Gohir.D04G153501' => 'ghi', 'Gohir.D04G153601' => 'ghi', 'Gohir.D05G331900' => 'ghi', 'Gohir.D09G095400' => 'ghi', 'Gohir.D11G301200' => 'ghi', 'Gohir.D12G234800' => 'ghi', 'Gohir.D13G157200' => 'ghi', 'Gohir.D13G227300' => 'ghi', 'Gorai.002G036600' => 'gra', 'Gorai.006G112100' => 'gra', 'Gorai.007G335500' => 'gra', 'Gorai.008G251100' => 'gra', 'Gorai.009G356200' => 'gra', 'Gorai.012G140400' => 'gra', 'Gorai.013G178000' => 'gra', 'Gorai.013G194700' => 'gra', 'Gorai.013G257800' => 'gra', 'GSVIVG01011255001' => 'vvi', 'GSVIVG01012881001' => 'vvi', 'GSVIVG01020404001' => 'vvi', 'GSVIVG01026440001' => 'vvi', 'HanXRQChr02g0039011' => 'han', 'HanXRQChr02g0039021' => 'han', 'HanXRQChr02g0051471' => 'han', 'HanXRQChr05g0154631' => 'han', 'HanXRQChr05g0160611' => 'han', 'HanXRQChr08g0217071' => 'han', 'HanXRQChr10g0315351' => 'han', 'HanXRQChr11g0334971' => 'han', 'HanXRQChr13g0409341' => 'han', 'HanXRQChr15g0493011' => 'han', 'Haze_08534' => 'cav', 'Haze_08565' => 'cav', 'Haze_20239' => 'cav', 'Haze_23278' => 'cav', 'Haze_26539' => 'cav', 'Haze_27061' => 'cav', 'Haze_27252' => 'cav', 'Hma1.2p1_0334F.1_g128700' => 'hma', 'Hma1.2p1_0518F.1_g171150' => 'hma', 'Hma1.2p1_0518F.1_g171155' => 'hma', 'Hma1.2p1_0637F.1_g193500' => 'hma', 'Hma1.2p1_1811F.1_g303580' => 'hma', 'Hma1.2p1_1811F.1_g303590' => 'hma', 'HPP92_000623' => 'vpl', 'HPP92_000624' => 'vpl', 'HPP92_000625' => 'vpl', 'HPP92_008714' => 'vpl', 'HPP92_008715' => 'vpl', 'HPP92_017079' => 'vpl', 'HPP92_020496' => 'vpl', 'HPP92_020500' => 'vpl', 'Hund12455' => 'sun', 'Hund12456' => 'sun', 'Hund26921' => 'sun', 'Lalb_Chr01g0015911' => 'lal', 'Lalb_Chr03g0031761' => 'lal', 'Lalb_Chr07g0179481' => 'lal', 'Lalb_Chr11g0073081' => 'lal', 'Lalb_Chr13g0301221' => 'lal', 'Lalb_Chr20g0108681' => 'lal', 'Lalb_Chr25g0284901' => 'lal', 'Lj1A906T50' => 'lonja', 'Lj1g0011461' => 'lja', 'Lj1g0017347' => 'lja', 'Lj2A837G8' => 'lonja', 'Lj2P836T4' => 'lonja', 'Lj2P836T6' => 'lonja', 'Lj3g0003556' => 'lja', 'Lj3g0024153' => 'lja', 'Lj3g0024642' => 'lja', 'Lj4g0000935' => 'lja', 'Lj7A447G15' => 'lonja', 'Lj7A450G51' => 'lonja', 'Lj7A458T49' => 'lonja', 'Lj7C447T6' => 'lonja', 'Lj8A188T55' => 'lonja', 'Lsat_1_v5_gn_0_16020' => 'lsa', 'Lsat_1_v5_gn_3_99821' => 'lsa', 'Lsat_1_v5_gn_3_99841' => 'lsa', 'Lsat_1_v5_gn_5_94361' => 'lsa', 'Lsat_1_v5_gn_7_112421' => 'lsa', 'Lsat_1_v5_gn_7_63140' => 'lsa', 'Lsat_1_v5_gn_7_70501' => 'lsa', 'Lsat_1_v5_gn_8_25560' => 'lsa', 'Manes.06G172600' => 'mes', 'Manes.11G105000' => 'mes', 'Manes.14G016900' => 'mes', 'Manes.14G137900' => 'mes', 'Mapoly0008s0107' => 'mpo', 'Mapoly0055s0029' => 'mpo', 'Mapoly0055s0033' => 'mpo', 'Mapoly0095s0055' => 'mpo', 'MBI01_g35741_MAGBIO' => 'mbi', 'MBI04_g45344_MAGBIO' => 'mbi', 'MBI04_g45345_MAGBIO' => 'mbi', 'MBI04_g45346_MAGBIO' => 'mbi', 'MBI17_g08177_MAGBIO' => 'mbi', 'MCO11G411' => 'mco', 'MCO12G218' => 'mco', 'MCO13G577' => 'mco', 'MD02G1013600' => 'mdo', 'MD04G1096500' => 'mdo', 'MD05G1220800' => 'mdo', 'MD05G1221000' => 'mdo', 'MD10G1203200' => 'mdo', 'MD10G1203300' => 'mdo', 'MD10G1213300' => 'mdo', 'MD15G1160400' => 'mdo', 'Medtr1g048000' => 'mtr', 'Medtr2g069050' => 'mtr', 'Medtr2g069310' => 'mtr', 'Medtr2g069320' => 'mtr', 'Medtr3g101820' => 'mtr', 'Medtr4g116430' => 'mtr', 'Medtr4g119340' => 'mtr', 'MELO3C000761.2' => 'cme', 'MELO3C004440.2' => 'cme', 'MELO3C013183.2' => 'cme', 'MELO3C019668.2' => 'cme', 'MELO3C019697.2' => 'cme', 'MELO3C019699.2' => 'cme', 'Migut.G00793' => 'egut', 'Migut.H01687' => 'egut', 'Migut.J00851' => 'egut', 'Migut.M01456' => 'egut', 'MSTRG.10400' => 'ama', 'MSTRG.1235' => 'ama', 'MSTRG.14546' => 'ama', 'MSTRG.21107' => 'ama', 'Nitab4.5_0001021g0120' => 'nta', 'Nitab4.5_0001555g0120' => 'nta', 'Nitab4.5_0002039g0030' => 'nta', 'Nitab4.5_0002039g0080' => 'nta', 'Nitab4.5_0002426g0040' => 'nta', 'Nitab4.5_0002498g0060' => 'nta', 'Nitab4.5_0004261g0040' => 'nta', 'Nitab4.5_0004261g0050' => 'nta', 'Nitab4.5_0004261g0070' => 'nta', 'Nitab4.5_0004392g0010' => 'nta', 'Nitab4.5_0011718g0010' => 'nta', 'Nitab4.5_0012668g0010' => 'nta', 'Nitab4.5_0012668g0020' => 'nta', 'Nn2g11419' => 'nnu', 'Nn3g16788' => 'nnu', 'Nn3g16789' => 'nnu', 'Nn6g34362' => 'nnu', 'Nn6g34584' => 'nnu', 'Nn7g38024' => 'nnu', 'Nn7g38301' => 'nnu', 'Oeu001948.1' => 'oeu', 'Oeu002803.1' => 'oeu', 'Oeu003995.1' => 'oeu', 'Oeu012220.1' => 'oeu', 'Oeu047103.1' => 'oeu', 'Oeu051478.1' => 'oeu', 'Oeu051999.1' => 'oeu', 'Os01g0723000' => 'osa', 'Os01g0742200' => 'osa', 'Os02g0519900' => 'osa', 'Os02g0543300' => 'osa', 'Os03g0650700' => 'osa', 'Os04g0118400' => 'osa', 'Os05g0467501' => 'osa', 'Os06g0608300' => 'osa', 'Peaxi162Scf00073g00038' => 'pax', 'Peaxi162Scf00073g00057' => 'pax', 'Peaxi162Scf00259g00019' => 'pax', 'Peaxi162Scf00391g00213' => 'pax', 'Peaxi162Scf00452g00839' => 'pax', 'Peaxi162Scf00452g00840' => 'pax', 'Peaxi162Scf00452g00841' => 'pax', 'Peaxi162Scf01090g00122' => 'pax', 'Peaxi162Scf01090g00123' => 'pax', 'PGR031G0094' => 'pgr', 'PGR031G0822' => 'pgr', 'PGR083G0454' => 'pgr', 'PGR102G0588' => 'pgr', 'PGR102G2314' => 'pgr', 'PGSC0003DMG400002992' => 'stu', 'PGSC0003DMG400030733' => 'stu', 'Phvul.003G003900' => 'pvu', 'Phvul.003G174100' => 'pvu', 'Phvul.005G058000' => 'pvu', 'Phvul.005G058100' => 'pvu', 'Potri.002G176966' => 'ptr', 'Potri.002G177032' => 'ptr', 'Potri.005G098100' => 'ptr', 'Potri.006G190600' => 'ptr', 'Potri.007G065600' => 'ptr', 'Potri.007G065700' => 'ptr', 'Potri.009G152500' => 'ptr', 'Potri.018G114900' => 'ptr', 'Pp3c11_25350' => 'ppa', 'Pp3c11_25450' => 'ppa', 'Pp3c11_25530' => 'ppa', 'Pp3c14_19900' => 'ppa', 'Pp3c17_21830' => 'ppa', 'Pp3c20_4000' => 'ppa', 'Pp3c27_6340' => 'ppa', 'Pp3c2_16870' => 'ppa', 'Pp3c5_1610' => 'ppa', 'Pp3c5_25950' => 'ppa', 'Pp3c6_29320' => 'ppa', 'Pp3c7_1950' => 'ppa', 'Pp3s128_10' => 'ppa', 'Pp3s128_50' => 'ppa', 'PRCOL_00000385' => 'pco', 'PRCOL_00003930' => 'pco', 'PRCOL_00005628' => 'pco', 'Prupe.3G036300' => 'ppe', 'Prupe.4G129900' => 'ppe', 'Prupe.4G138700' => 'ppe', 'Prupe.4G138900' => 'ppe', 'Prupe.4G141700' => 'ppe', 'Psat0s2411g0200' => 'psa', 'Psat1g012200' => 'psa', 'Psat1g012560' => 'psa', 'Psat1g012600' => 'psa', 'Psat2g012200' => 'psa', 'Psat4g027720' => 'psa', 'Psat4g032760' => 'psa', 'Psat4g063080' => 'psa', 'Psat6g048640' => 'psa', 'Psat7g201920' => 'psa', 'PSO013G0288' => 'pso', 'PSO017G2591' => 'pso', 'PSO017G3315' => 'pso', 'PSO017G4013' => 'pso', 'PSO063G0507' => 'pso', 'PSO063G0608' => 'pso', 'PSO063G6800' => 'pso', 'PSO135G0634' => 'pso', 'PSO210G1464' => 'pso', 'PSO210G6273' => 'pso', 'PSO238G0019' => 'pso', 'PSO339G0140' => 'pso', 'PSO339G2324' => 'pso', 'PSO384G3163' => 'pso', 'PSO478G0038' => 'pso', 'PSO782G5049' => 'pso', 'PSO801G0441' => 'pso', 'PSO832G0428' => 'pso', 'QL01p003759' => 'qlo', 'QL01p016405' => 'qlo', 'QL02p037156' => 'qlo', 'QL02p091140' => 'qlo', 'QL04p076657' => 'qlo', 'QL04p076684' => 'qlo', 'RcHm_v2.0_Chr1g0327101' => 'rch', 'RcHm_v2.0_Chr1g0327121' => 'rch', 'RcHm_v2.0_Chr2g0127751' => 'rch', 'RcHm_v2.0_Chr5g0026251' => 'rch', 'RcHm_v2.0_Chr5g0026301' => 'rch', 'RcHm_v2.0_Chr6g0257391' => 'rch', 'RcHm_v2.0_Chr6g0274771' => 'rch', 'Rhsim03G0173000' => 'rsi', 'Rhsim06G0239600' => 'rsi', 'Rhsim08G0237400' => 'rsi', 'Rhsim09G0132100' => 'rsi', 'Rhsim11G0045300' => 'rsi', 'Sabra05G0080400' => 'sbr', 'Sabra07G0052200' => 'sbr', 'Sabra07G0052300' => 'sbr', 'Sabra09G0120400' => 'sbr', 'Sabra18G0097700' => 'sbr', 'SalBow3G1027' => 'sbo', 'SalBow3G2439' => 'sbo', 'SalBow7G1250' => 'sbo', 'SalBow7G2773' => 'sbo', 'SalBow7G2856' => 'sbo', 'SalBow8G0361' => 'sbo', 'SalBow8G1690' => 'sbo', 'Sc06g0001950' => 'sci', 'Sc11g0003980' => 'sci', 'Sc19g0006310' => 'sci', 'Sc19g0006320' => 'sci', 'Sc19g0006330' => 'sci', 'Sc23g0003990' => 'sci', 'Sed0015750' => 'sed', 'Sed0018542' => 'sed', 'Sed0019814' => 'sed', 'Sed0027465' => 'sed', 'Sed0028170' => 'sed', 'SEGI_06225' => 'sgi', 'SEGI_09787' => 'sgi', 'SEGI_13106' => 'sgi', 'SEGI_13256' => 'sgi', 'SEGI_16837' => 'sgi', 'SEGI_19022' => 'sgi', 'SEGI_19172' => 'sgi', 'SEGI_29204' => 'sgi', 'SEGI_29828' => 'sgi', 'SEGI_36116' => 'sgi', 'SEGI_38305' => 'sgi', 'SEGI_39423' => 'sgi', 'SEGI_40149' => 'sgi', 'SEGI_41092' => 'sgi', 'SGA_v2.0_scaffold106G30611' => 'sas', 'SGA_v2.0_scaffold106G30612' => 'sas', 'SGA_v2.0_scaffold106G30613' => 'sas', 'SGA_v2.0_scaffold11G05856' => 'sas', 'SGA_v2.0_scaffold12G06248' => 'sas', 'SGA_v2.0_scaffold14G07042' => 'sas', 'SGA_v2.0_scaffold155G37215' => 'sas', 'SGA_v2.0_scaffold201G41327' => 'sas', 'SGA_v2.0_scaffold248G44913' => 'sas', 'SGA_v2.0_scaffold32G13062' => 'sas', 'SGA_v2.0_scaffold32G13094' => 'sas', 'SGA_v2.0_scaffold32G13115' => 'sas', 'SGA_v2.0_scaffold32G13117' => 'sas', 'SHI21437' => 'shi', 'SHI25283' => 'shi', 'SMO115G0032' => 'smo', 'SMO116G0243' => 'smo', 'SMO361G0467' => 'smo', 'SMO364G0415' => 'smo', 'SMO367G1260' => 'smo', 'Solyc07g007210.3' => 'sly', 'Solyc08g062910.4' => 'sly', 'Solyc08g062920.3' => 'sly', 'Solyc11g071770.1' => 'sly', 'Sopen07g003260' => 'spe', 'Sopen08g018430' => 'spe', 'Sopen08g018460' => 'spe', 'Sopen11g029440' => 'spe', 'Sp1g05030' => 'spa', 'Sp1g41680' => 'spa', 'Sp3g20670' => 'spa', 'Sp5g34180' => 'spa', 'TAR374G1323' => 'tar', 'TAR626G0627' => 'tar', 'TAR626G1443' => 'tar', 'TAR627G0730' => 'tar', 'TAR629G1591' => 'tar', 'THA.LOC104808125' => 'tha', 'THA.LOC104812359' => 'tha', 'THA.LOC104813614' => 'tha', 'THA.LOC104815391' => 'tha', 'THA.LOC104815718' => 'tha', 'Thecc.01G127400' => 'tca', 'Thecc.07G151100' => 'tca', 'Thecc.09G282500' => 'tca', 'Thhalv10006688m.g' => 'esa', 'Thhalv10011235m.g' => 'esa', 'Thhalv10019976m.g' => 'esa', 'TPR.G14630' => 'tpr', 'TPR.G15808' => 'tpr', 'TPR.G19786' => 'tpr', 'TPR.G35073' => 'tpr', 'TPR.G9739' => 'tpr', 'TWI34G0205' => 'twi', 'TWI38G0711' => 'twi', 'TWI38G0885' => 'twi', 'TWI39G0370' => 'twi', 'TWI39G0424' => 'twi', 'TWI53G1197' => 'twi', 'TWI63G1100' => 'twi', 'unitig_27.g25353' => 'ugi', 'unitig_28.g29436' => 'ugi', 'unitig_578.g16050' => 'ugi', 'unitig_578.g16319' => 'ugi', 'unitig_578.g16320' => 'ugi', 'unitig_747.g21981' => 'ugi', 'unitig_747.g21982' => 'ugi', 'unitig_8.g4764' => 'ugi', 'unitig_8.g4765' => 'ugi', 'unitig_8.g4766' => 'ugi', 'vmacro09649' => 'vma', 'vmacro09781' => 'vma', 'vmacro10387' => 'vma', 'vmacro11672' => 'vma', 'VMungo0647G1181' => 'vmu', 'VMungo0720G0297' => 'vmu', 'VMungo1080G0046' => 'vmu', 'VMungo1080G1563' => 'vmu', 'VMungo1127G0719' => 'vmu', 'VMungo1215G0342' => 'vmu', 'VMungo1215G1231' => 'vmu', 'Zm00001eb052970' => 'zma', 'Zm00001eb063810' => 'zma', 'Zm00001eb063840' => 'zma', 'Zm00001eb063860' => 'zma', 'Zm00001eb311640' => 'zma', 'Zm00001eb371200' => 'zma', 'Zm00001eb386630' => 'zma' ) $gf_id = 'HOM05D000835' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000835' ) $data_identifier = 'HOM05D000835' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 22, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 4, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 10, 'bra' => (int) 7, 'can' => (int) 7, 'cansat' => (int) 3, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 7, 'cbr' => (int) 6, 'ccan' => (int) 8, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 17, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 4, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 25, 'fve' => (int) 11, 'gma' => (int) 8, 'ghi' => (int) 16, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 8, 'sun' => (int) 3, 'lal' => (int) 7, 'lonja' => (int) 9, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 4, 'mbi' => (int) 5, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 7, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 2, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 14, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 10, 'pso' => (int) 18, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 5, 'sgi' => (int) 14, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 4, 'spe' => (int) 4, 'spa' => (int) 4, 'tar' => (int) 5, 'tha' => (int) 5, 'tca' => (int) 3, 'esa' => (int) 3, 'tpr' => (int) 5, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb386630' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1